PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 144aa    MW: 16056.8 Da    PI: 8.0459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.77.8e-2251251118
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lppGfrFhPtdeel+++yLkkkv+++   ++ ++i+++d+yk++Pw+L  ++++++     e   Fs+  ++++       + ++   +  g+dk
  XP_009606924.1   5 LPPGFRFHPTDEELIDCYLKKKVSASYpDPVISIIADIDLYKFNPWELLYTISGNRPilerE-NGFSTVPSAEN--ILMVFVLTDQLHQGLGTDK 96 
                     79*********************99885566677**************85544422222212.33333333322..222233456778999**** PP

             NAM  91 evlsk.kgelvglkktLvfykgrapkgek 118
                     ++ls+ +++  g+k+tLvfy grapkg+k
  XP_009606924.1  97 PILSSiTSQCLGVKNTLVFYIGRAPKGTK 125
                     ****988899****************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-224126IPR003441NAC domain
PROSITE profilePS5100521.5955144IPR003441NAC domain
PfamPF023652.4E-116122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDRSLPPGFR FHPTDEELID CYLKKKVSAS YPDPVISIIA DIDLYKFNPW ELLYTISGNR  60
PILERENGFS TVPSAENILM VFVLTDQLHQ GLGTDKPILS SITSQCLGVK NTLVFYIGRA  120
PKGTKLRLTG RCTSIGLLIM AILL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-20412516132NO APICAL MERISTEM PROTEIN
1ut4_B6e-20412516132NO APICAL MERISTEM PROTEIN
1ut7_A6e-20412516132NO APICAL MERISTEM PROTEIN
1ut7_B6e-20412516132NO APICAL MERISTEM PROTEIN
3swm_A6e-20412519135NAC domain-containing protein 19
3swm_B6e-20412519135NAC domain-containing protein 19
3swm_C6e-20412519135NAC domain-containing protein 19
3swm_D6e-20412519135NAC domain-containing protein 19
3swp_A6e-20412519135NAC domain-containing protein 19
3swp_B6e-20412519135NAC domain-containing protein 19
3swp_C6e-20412519135NAC domain-containing protein 19
3swp_D6e-20412519135NAC domain-containing protein 19
4dul_A6e-20412516132NAC domain-containing protein 19
4dul_B6e-20412516132NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606924.11e-103PREDICTED: NAC transcription factor 25-like
RefseqXP_016491527.11e-103PREDICTED: NAC transcription factor 56-like
SwissprotA0SPJ81e-23NAM1_HORVD; NAC transcription factor NAM-1
SwissprotA2YMR01e-23NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLB9H2P95e-29B9H2P9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04920.11e-28(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2440122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-24NAC domain containing protein 25